ProteomeXchange fully supports both MS/MS proteomics and SRM data submissions. Submissions of other types of proteomics data is also possible using the Partial Submission mechanism.
PRIDE - PRoteomics IDEntifications Database
PRIDE accepts both
For detailed information, please consult the following documents
PeptideAtlas - PASSEL
SRM/MRM data can be submitted to PASSEL.
Shotgun proteomics data can be submitted to MassIVE.
Data submission documentation is available at jPost Help Page.
Data submission documentation is available at User Manual for iProx Page.